Sep 2013 to 2000 Statistician (Bioinformatician)KLA-Tencor
Jun 2012 to Dec 2013 Technical InternCalifornia State University East Bay
Dec 2012 to Mar 2013 Student Assistant
Education:
California State University East Bay Hayward, CA 2013 Master of Science in StatisticsUniversity of British Columbia Vancouver, BC 2010 Bachelor of Science in Statistics
Skills:
R; SAS; Minitab; SQL; JMP; Python; Linux/UNIX; Maple; GeneSpring; Google Charts; Prism; UCSC Genome Browser; Dreamweaver; Fluent in Mandarin Chinese
Disclosed herein are methods and systems for determining occurrences of targets. In some embodiments, the method comprises: collapsing putative sequences of the target; collapsing molecular label sequences associated with the putative sequences of the target; and estimating the occurrence of the target, wherein the occurrence of the target estimated correlates with the occurrence of molecular label sequences associated with the putative sequences of the target in the sequencing data after collapsing the occurrence of the putative sequences of the target and the occurrence of noise molecular label sequences.
- Menlo Park CA, US Jennifer Tsai - Menlo Park CA, US Eleen Shum - Menlo Park CA, US Lisha Deng - Menlo Park CA, US Glenn K. Fu - Menlo Park CA, US
International Classification:
G06K 19/06
Abstract:
Disclosed herein are methods and systems for determining the numbers of targets. In some embodiments, the method comprise: stochastically barcoding targets using stochastic barcodes; obtaining sequencing data; for one or more of the targets: counting the number of molecular labels with distinct sequences associated with the target in the sequencing data; identifying clusters of molecular labels of the target using directional adjacency; collapsing the sequencing data using the clusters of molecular labels of the target identified; and estimating the number of the target.